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Adding duplicate header line keys is a logger.debug not logger.warn message now

This commit is contained in:
Mark DePristo 2012-07-02 11:39:34 -04:00
parent 01e04992f8
commit bcd2e13d8b
1 changed files with 1 additions and 1 deletions
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2
public/java/src/org/broadinstitute/sting/utils/codecs/vcf/VCFHeader.java
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@ -214,7 +214,7 @@ public class VCFHeader {
private final <T extends VCFCompoundHeaderLine> void addMetaDataMapBinding(final Map<String, T> map, T line) { private final <T extends VCFCompoundHeaderLine> void addMetaDataMapBinding(final Map<String, T> map, T line) {
final String key = line.getID(); final String key = line.getID();
if ( map.containsKey(key) ) if ( map.containsKey(key) )
logger.warn("Found duplicate VCF header lines for " + key + "; keeping the first only" ); logger.debug("Found duplicate VCF header lines for " + key + "; keeping the first only" );
else else
map.put(key, line); map.put(key, line);
} }