Added the -maxQ argument to the list of arguments in the PG tag

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2627 348d0f76-0448-11de-a6fe-93d51630548a

java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java

@@ -240,6 +240,7 @@ public class TableRecalibrationWalker extends ReadWalker<SAMRecord, SAMFileWrite
                 }
             }
             commandLineString += "pQ=" + PRESERVE_QSCORES_LESS_THAN + ", ";
+            commandLineString += "maxQ=" + MAX_QUALITY_SCORE + ", ";
             commandLineString += "smoothing=" + SMOOTHING;
             programRecord.setCommandLine( commandLineString );
             header.addProgramRecord( programRecord );