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useful convenience function to get a genotype associated with a particular sample 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2510 348d0f76-0448-11de-a6fe-93d51630548a
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depristo 2010-01-06 14:53:56 +00:00
parent ec774f62be
commit bca3d1b943
1 changed files with 10 additions and 0 deletions
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10
java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFRecord.java
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@ -417,6 +417,16 @@ public class VCFRecord implements Variation, VariantBackedByGenotype {
return names; return names;
} }
public VCFGenotypeRecord getGenotype(final String sampleName) {
for ( VCFGenotypeRecord rec : getVCFGenotypeRecords() ) {
if ( rec.getSampleName().equals(sampleName) ) {
return rec;
}
}
return null;
}
public String getGenotypeFormatString() { public String getGenotypeFormatString() {
return mGenotypeFormatString; return mGenotypeFormatString;
}// the formatting string for our genotype records }// the formatting string for our genotype records