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Updated the package to use RealignerTargetCreator. Also, removed IndelGenotyper since it's still experimental. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2698 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2010-01-27 03:45:15 +00:00
parent 476d6f3076
commit bbddeb693f
1 changed files with 2 additions and 7 deletions
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9
packages/LocalRealignmentAroundIndels.xml
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@ -5,14 +5,9 @@
<resource-bundle file="StingText.properties" />
<dependencies>
<!-- Local realignment around indels -->
<class name="org.broadinstitute.sting.gatk.walkers.indels.CleanedReadInjector" />
<class name="org.broadinstitute.sting.gatk.walkers.indels.IndelIntervalWalker" />
<class name="org.broadinstitute.sting.gatk.walkers.indels.RealignerTargetCreator" />
<class name="org.broadinstitute.sting.gatk.walkers.indels.IntervalCleanerWalker" />
<class name="org.broadinstitute.sting.gatk.walkers.indels.IntervalMergerWalker" />
<class name="org.broadinstitute.sting.gatk.walkers.indels.MismatchIntervalWalker" />
<class name="org.broadinstitute.sting.gatk.walkers.indels.SNPClusterWalker" />
<class name="org.broadinstitute.sting.gatk.walkers.indels.IndelGenotyperWalker" />
<class name="org.broadinstitute.sting.gatk.walkers.indels.IndelGenotyperV2Walker" />
<class name="org.broadinstitute.sting.gatk.walkers.indels.CleanedReadInjector" />
</dependencies>
</executable>
</package>