diff --git a/public/scala/test/org/broadinstitute/sting/queue/pipeline/DataProcessingPipelineTest.scala b/public/scala/test/org/broadinstitute/sting/queue/pipeline/DataProcessingPipelineTest.scala index a3c5f5144..20458c7c4 100644 --- a/public/scala/test/org/broadinstitute/sting/queue/pipeline/DataProcessingPipelineTest.scala +++ b/public/scala/test/org/broadinstitute/sting/queue/pipeline/DataProcessingPipelineTest.scala @@ -39,7 +39,6 @@ class DataProcessingPipelineTest { " -R " + BaseTest.publicTestDir + "exampleFASTA.fasta", " -i " + BaseTest.publicTestDir + "exampleBAM.bam", " -D " + BaseTest.publicTestDir + "exampleDBSNP.vcf", - " -nv ", " -test ", " -p " + projectName).mkString spec.fileMD5s += testOut -> "0de95b5642e41e11ecd6fa1770242b88" @@ -57,7 +56,6 @@ class DataProcessingPipelineTest { " -R " + BaseTest.publicTestDir + "exampleFASTA.fasta", " -i " + BaseTest.publicTestDir + "exampleBAM.bam", " -D " + BaseTest.publicTestDir + "exampleDBSNP.vcf", - " -nv ", " -test ", " -bwa /home/unix/carneiro/bin/bwa", " -bwape ",