From bba69701b505dec882ff8eee978be0451ec5b335 Mon Sep 17 00:00:00 2001
From: Mark DePristo <depristo@broadinstitute.org>
Date: Wed, 19 Oct 2011 17:49:17 -0400
Subject: [PATCH] Now creates GATKSamRecords now SamRecords

---
 .../org/broadinstitute/sting/utils/sam/ArtificialSAMUtils.java  | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/utils/sam/ArtificialSAMUtils.java b/public/java/src/org/broadinstitute/sting/utils/sam/ArtificialSAMUtils.java
index 2dcdd5ce6..b6b671360 100755
--- a/public/java/src/org/broadinstitute/sting/utils/sam/ArtificialSAMUtils.java
+++ b/public/java/src/org/broadinstitute/sting/utils/sam/ArtificialSAMUtils.java
@@ -146,7 +146,7 @@ public class ArtificialSAMUtils {
         if( (refIndex == SAMRecord.NO_ALIGNMENT_REFERENCE_INDEX && alignmentStart != SAMRecord.NO_ALIGNMENT_START) ||
             (refIndex != SAMRecord.NO_ALIGNMENT_REFERENCE_INDEX && alignmentStart == SAMRecord.NO_ALIGNMENT_START) )
             throw new ReviewedStingException("Invalid alignment start for artificial read, start = " + alignmentStart);
-        SAMRecord record = new SAMRecord(header);
+        SAMRecord record = new GATKSamRecord(header);
         record.setReadName(name);
         record.setReferenceIndex(refIndex);
         record.setAlignmentStart(alignmentStart);