From bb3dbb57568f8f59b1a682854b843772e491b7a1 Mon Sep 17 00:00:00 2001
From: jmaguire <jmaguire@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 1 Apr 2009 19:50:31 +0000
Subject: [PATCH] change default onTraversalDone to use the new output streams

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@249 348d0f76-0448-11de-a6fe-93d51630548a
---
 java/src/org/broadinstitute/sting/gatk/walkers/Walker.java | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/Walker.java b/java/src/org/broadinstitute/sting/gatk/walkers/Walker.java
index 55be26501..329645481 100755
--- a/java/src/org/broadinstitute/sting/gatk/walkers/Walker.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/Walker.java
@@ -48,7 +48,6 @@ public abstract class Walker<MapType, ReduceType> {
 
     public void initialize() { }
     public void onTraversalDone(ReduceType result) {
-        // TODO: replace with the correct output stream
-        System.out.println("[REDUCE RESULT] Traversal result is: " + result);
+        out.println("[REDUCE RESULT] Traversal result is: " + result);
     }
 }