From bb1d31914c964effad19c40782f4760fe746f0ba Mon Sep 17 00:00:00 2001 From: hanna Date: Tue, 11 Aug 2009 12:49:23 +0000 Subject: [PATCH] 2009_02 release is no longer with us. Update the bam list. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1406 348d0f76-0448-11de-a6fe-93d51630548a --- testdata/ValidatingPileupTargets.list | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/testdata/ValidatingPileupTargets.list b/testdata/ValidatingPileupTargets.list index 43f5722f8..612aacaf1 100755 --- a/testdata/ValidatingPileupTargets.list +++ b/testdata/ValidatingPileupTargets.list @@ -2,13 +2,13 @@ /humgen/gsa-scr1/GATK_Data/Validation_Data/MV1994.bam /humgen/gsa-scr1/GATK_Data/Validation_Data/Escherichia_coli_K12_MG1655.fasta * # daughter chrom 6 deep coverage first 10 MB -/broad/1KG/DCC/data/NA12878/alignment/NA12878.chrom6.SRP000032.2009_02.bam /broad/1KG/reference/human_b36_both.fasta 6:1-10,000,00 +/broad/1KG/DCC/data/NA12878/alignment/NA12878.chrom6.SLX.SRP000032.2009_06.bam /broad/1KG/reference/human_b36_both.fasta 6:1-10,000,00 # daughter chrom 1 deep coverage -/broad/1KG/DCC/data/NA12878/alignment/NA12878.chrom1.SRP000032.2009_02.bam /broad/1KG/reference/human_b36_both.fasta * +/broad/1KG/DCC/data/NA12878/alignment/NA12878.chrom1.SLX.SRP000032.2009_06.bam /broad/1KG/reference/human_b36_both.fasta * # mother of trio individual low coverage -/broad/1KG/DCC/data/NA12892/alignment/NA12892.SRP000031.2009_02.bam /broad/1KG/reference/human_b36_both.fasta * +/broad/1KG/DCC/data/NA12892/alignment/NA12892.SLX.SRP000031.2009_06.bam /broad/1KG/reference/human_b36_both.fasta * # Pilot 3 /broad/1KG/pilot3/sams/NA12892.bam /seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta *