diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java index e12f26fcc..addfc5fab 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java @@ -103,7 +103,7 @@ import java.util.*; * -T IndelRealigner \ * -targetIntervals intervalListFromRTC.intervals \ * -o realignedBam.bam \ - * [--known /path/to/indels.vcf] \ + * [-known /path/to/indels.vcf] \ * [-compress 0] (this argument recommended to speed up the process *if* this is only a temporary file; otherwise, use the default value) * *