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Close BQSRGatherer's PrintStream when finished

This commit is contained in:
Ron Levine 2017-06-24 13:40:25 -04:00
parent 18c9fe41c7
commit ba7df054f0
1 changed files with 1 additions and 0 deletions
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public/gatk-engine/src/main/java/org/broadinstitute/gatk/engine/recalibration/BQSRGatherer.java
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@ -61,6 +61,7 @@ public class BQSRGatherer extends Gatherer {
throw new UserException.MissingArgument("output", MISSING_OUTPUT_FILE); throw new UserException.MissingArgument("output", MISSING_OUTPUT_FILE);
} }
final GATKReport report = gatherReport(inputs); final GATKReport report = gatherReport(inputs);
outputFile.close();
report.print(outputFile); report.print(outputFile);
} }