Close BQSRGatherer's PrintStream when finished

2017-06-24 13:40:25 -04:00 · 2017-06-24 13:40:25 -04:00 · ba7df054f0
parent 18c9fe41c7
commit ba7df054f0
1 changed files with 1 additions and 0 deletions
--- a/public/gatk-engine/src/main/java/org/broadinstitute/gatk/engine/recalibration/BQSRGatherer.java
+++ b/public/gatk-engine/src/main/java/org/broadinstitute/gatk/engine/recalibration/BQSRGatherer.java
@ -61,6 +61,7 @@ public class BQSRGatherer extends Gatherer  {
            throw new UserException.MissingArgument("output", MISSING_OUTPUT_FILE);
        }
        final GATKReport report = gatherReport(inputs);
+        outputFile.close();
        report.print(outputFile);
    }