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add FLT ROD 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1257 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-07-15 19:40:50 +00:00
parent 800f7e6360
commit ba349e8d52
1 changed files with 11 additions and 8 deletions
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19
java/src/org/broadinstitute/sting/gatk/refdata/ReferenceOrderedData.java
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@ -1,18 +1,21 @@
package org.broadinstitute.sting.gatk.refdata;
import org.apache.log4j.Logger;
import org.broadinstitute.sting.utils.MalformedGenomeLocException;
import org.broadinstitute.sting.utils.Utils;
import org.broadinstitute.sting.utils.xReadLines;
import java.io.File;
import java.io.FileNotFoundException;
import java.io.FileWriter;
import java.io.IOException;
import java.io.FileNotFoundException;
import java.util.*;
import java.lang.reflect.Constructor;
import java.lang.reflect.InvocationTargetException;
import java.lang.reflect.Method;
import java.util.*;
import org.broadinstitute.sting.gatk.iterators.PushbackIterator;
import org.broadinstitute.sting.gatk.refdata.rodRefSeq;
import org.broadinstitute.sting.utils.GenomeLoc;
import org.broadinstitute.sting.utils.xReadLines;
import org.broadinstitute.sting.utils.Utils;
import org.broadinstitute.sting.utils.MalformedGenomeLocException;
import org.apache.log4j.Logger;
/**
* Class for representing arbitrary reference ordered data sets
@ -61,6 +64,7 @@ public class ReferenceOrderedData<ROD extends ReferenceOrderedDatum> implements
addModule("HapMapAlleleFrequencies", HapMapAlleleFrequenciesROD.class);
addModule("SAMPileup", rodSAMPileup.class);
addModule("GELI", rodGELI.class);
addModule("FLT", rodFLT.class);
addModule("RefSeq", rodRefSeq.class);
addModule("Table", TabularROD.class);
addModule("PooledEM", PooledEMSNPROD.class);
@ -69,7 +73,6 @@ public class ReferenceOrderedData<ROD extends ReferenceOrderedDatum> implements
addModule("HapMapGenotype", HapMapGenotypeROD.class);
addModule("Intervals", IntervalRod.class);
addModule("Variants", rodVariants.class);
addModule("GFF", RodGLF.class);
}