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The BaseRecalibrator and DelocalizedBaseRecalibrator have gotten out of sync. Fixing.

This commit is contained in:
Ryan Poplin 2012-09-19 12:30:26 -04:00
parent 7a7103a757
commit b99099f05c
1 changed files with 1 additions and 1 deletions
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2
protected/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/BQSRIntegrationTest.java
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@ -137,7 +137,7 @@ public class BQSRIntegrationTest extends WalkerTest {
"-T PrintReads" + "-T PrintReads" +
" -R " + hg18Reference + " -R " + hg18Reference +
" -I " + privateTestDir + "HiSeq.1mb.1RG.bam" + " -I " + privateTestDir + "HiSeq.1mb.1RG.bam" +
" -BQSR " + privateTestDir + "HiSeq.1mb.1RG.table" + " -BQSR " + privateTestDir + "HiSeq.20mb.1RG.table" +
params.args + params.args +
" -o %s", " -o %s",
Arrays.asList(params.md5)); Arrays.asList(params.md5));