The BaseRecalibrator and DelocalizedBaseRecalibrator have gotten out of sync. Fixing.

2012-09-19 12:30:26 -04:00 · 2012-09-19 12:30:26 -04:00 · b99099f05c
parent 7a7103a757
commit b99099f05c
1 changed files with 1 additions and 1 deletions
--- a/protected/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/BQSRIntegrationTest.java
+++ b/protected/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/BQSRIntegrationTest.java
@ -137,7 +137,7 @@ public class BQSRIntegrationTest extends WalkerTest {
                "-T PrintReads" +
                        " -R " + hg18Reference +
                        " -I " + privateTestDir + "HiSeq.1mb.1RG.bam" +
-                        " -BQSR " + privateTestDir + "HiSeq.1mb.1RG.table" +
+                        " -BQSR " + privateTestDir + "HiSeq.20mb.1RG.table" +
                        params.args +
                        " -o %s",
                Arrays.asList(params.md5));