diff --git a/python/SyzygyCallsFileToVCF.py b/python/SyzygyCallsFileToVCF.py index e813a6998..f23b109b0 100755 --- a/python/SyzygyCallsFileToVCF.py +++ b/python/SyzygyCallsFileToVCF.py @@ -115,7 +115,7 @@ for line in raw_calls_file.readlines(): if ( not two_lines_ago ): continue # window not filled yet else: - if ( float(this_line[lod_score_index]) > 0 and this_line[call_index] != "D" and this_line[call_index] != "I"): + if ( float(this_line[lod_score_index]) > 1 and this_line[call_index] != "D" and this_line[call_index] != "I"): # potential call chrom = this_line[chrompos].split(":")[0] pos = this_line[chrompos].split(":")[1]