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Queue now uses its own version instead of the gatk version. 

Added a Queue release directory.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4050 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kshakir 2010-08-17 19:34:23 +00:00
parent ede87a03c2
commit b7c60b9729
3 changed files with 65 additions and 1 deletions
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31
java/src/org/broadinstitute/sting/queue/QueueVersion.java 100644
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@ -0,0 +1,31 @@
/*
* Copyright (c) 2010, The Broad Institute
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the
* Software is furnished to do so, subject to the following
* conditions:
*
* The above copyright notice and this permission notice shall be
* included in all copies or substantial portions of the Software.
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
* OTHER DEALINGS IN THE SOFTWARE.
*/
package org.broadinstitute.sting.queue;
/**
* Generates the Queue version in the StingText.properties by working around http://bugs.sun.com/bugdatabase/view_bug.do?bug_id=4492654
*/
public class QueueVersion {
}

29
java/src/org/broadinstitute/sting/queue/package-info.java 100644
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@ -0,0 +1,29 @@
/*
* Copyright (c) 2010, The Broad Institute
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the
* Software is furnished to do so, subject to the following
* conditions:
*
* The above copyright notice and this permission notice shall be
* included in all copies or substantial portions of the Software.
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
* OTHER DEALINGS IN THE SOFTWARE.
*/
/**
* Provides command line pipeline framework highly optimized for analysis of sequencing data.
* @version 1.0
*/
package org.broadinstitute.sting.queue;

6
packages/Queue.xml
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@ -1,6 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<package name="Queue">
<version file="StingText.properties" property="org.broadinstitute.sting.gatk.version" />
<version file="StingText.properties" property="org.broadinstitute.sting.queue.version" />
<executable name="Queue">
<main-class name="org.broadinstitute.sting.queue.QCommandLine" />
<resource-bundle file="StingText.properties" />
@ -15,4 +15,8 @@
<package name="org.broadinstitute.sting.queue.extensions.*" />
</dependencies>
</executable>
<release>
<executable directory="/humgen/gsa-hpprojects/Queue/bin" symlink="current" />
<archive directory="/web/ftp/pub/gsa/Queue" symlink="Queue-latest.tar.bz2" />
</release>
</package>