diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/BQSRGathererUnitTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/BQSRGathererUnitTest.java index dc6d1c512..fe83dce22 100644 --- a/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/BQSRGathererUnitTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/BQSRGathererUnitTest.java @@ -2,13 +2,10 @@ package org.broadinstitute.sting.gatk.walkers.bqsr; import org.broadinstitute.sting.gatk.report.GATKReport; import org.broadinstitute.sting.gatk.report.GATKReportTable; -import org.broadinstitute.sting.utils.exceptions.ReviewedStingException; import org.testng.Assert; import org.testng.annotations.Test; import java.io.File; -import java.io.FileNotFoundException; -import java.io.PrintStream; import java.util.LinkedList; import java.util.List; @@ -21,19 +18,6 @@ public class BQSRGathererUnitTest { private static File recal = new File("public/testdata/exampleGRP.grp"); - @Test(enabled = true) - public void test(){ - PrintStream out; - try { - File f = new File("foo2.grp"); - out = new PrintStream(f); - } catch (FileNotFoundException e) { - throw new ReviewedStingException("f"); - } - GATKReport report = new GATKReport("foo.grp"); - report.print(out); - } - //todo -- this test doesnt work because the primary keys in different tables are not the same. Need to either implement "sort" for testing purposes on GATKReport or have a sophisticated comparison measure @Test(enabled = false) public void testCombineSimilarFiles() {