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this was a dummy test I was using to figure out what the problem was. Deleting it.

This commit is contained in:
Mauricio Carneiro 2012-03-29 18:00:25 -04:00
parent cbd21c6339
commit b7c59d5d43
1 changed files with 0 additions and 16 deletions
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16
public/java/test/org/broadinstitute/sting/gatk/walkers/bqsr/BQSRGathererUnitTest.java
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@ -2,13 +2,10 @@ package org.broadinstitute.sting.gatk.walkers.bqsr;
import org.broadinstitute.sting.gatk.report.GATKReport;
import org.broadinstitute.sting.gatk.report.GATKReportTable;
import org.broadinstitute.sting.utils.exceptions.ReviewedStingException;
import org.testng.Assert;
import org.testng.annotations.Test;
import java.io.File;
import java.io.FileNotFoundException;
import java.io.PrintStream;
import java.util.LinkedList;
import java.util.List;
@ -21,19 +18,6 @@ public class BQSRGathererUnitTest {
private static File recal = new File("public/testdata/exampleGRP.grp");
@Test(enabled = true)
public void test(){
PrintStream out;
try {
File f = new File("foo2.grp");
out = new PrintStream(f);
} catch (FileNotFoundException e) {
throw new ReviewedStingException("f");
}
GATKReport report = new GATKReport("foo.grp");
report.print(out);
}
//todo -- this test doesnt work because the primary keys in different tables are not the same. Need to either implement "sort" for testing purposes on GATKReport or have a sophisticated comparison measure
@Test(enabled = false)
public void testCombineSimilarFiles() {