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Removed setting of a default queue in PbsEngineJobRunner. Discussed here: http://gatkforums.broadinstitute.org/discussion/3959/would-it-be-possible-for-pbsengine-jobrunner-not-to-set-a-default-queue 

Signed-off-by: Khalid Shakir <kshakir@broadinstitute.org>
This commit is contained in:
Carlos Borroto 2014-04-26 12:41:47 -04:00 committed by Khalid Shakir
parent 385fe5fb56
commit b7a59e01aa
1 changed files with 0 additions and 2 deletions
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public/queue-framework/src/main/scala/org/broadinstitute/sting/queue/engine/pbsengine/PbsEngineJobRunner.scala
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@ -54,8 +54,6 @@ class PbsEngineJobRunner(session: Session, function: CommandLineFunction) extend
// If the job queue is set specify the job queue // If the job queue is set specify the job queue
if (function.jobQueue != null) if (function.jobQueue != null)
nativeSpec += " -q " + function.jobQueue nativeSpec += " -q " + function.jobQueue
else
nativeSpec += " -q normal "
// If the resident set size is requested pass on the memory request // If the resident set size is requested pass on the memory request
// mem_free is the standard, but may also be virtual_free or even not available // mem_free is the standard, but may also be virtual_free or even not available