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update docs for LEftAlignVariants

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Eric Banks 2013-01-06 01:56:57 -05:00
parent bce6fce58d
commit b73d72fe94
1 changed files with 2 additions and 1 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/LeftAlignVariants.java
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@ -54,9 +54,10 @@ import java.util.*;
* Left-aligns indels from a variants file. * Left-aligns indels from a variants file.
* *
* <p> * <p>
* LeftAlignVariants is a tool that takes a VCF file and left-aligns any indels inside it. The same indel can often be * LeftAlignVariants is a tool that takes a VCF file and left-aligns the indels inside it. The same indel can often be
* placed at multiple positions and still represent the same haplotype. While the standard convention with VCF is to * placed at multiple positions and still represent the same haplotype. While the standard convention with VCF is to
* place an indel at the left-most position this doesn't always happen, so this tool can be used to left-align them. * place an indel at the left-most position this doesn't always happen, so this tool can be used to left-align them.
* Note that this tool cannot handle anything other than bi-allelic, simple indels. Complex events are written out unchanged.
* *
* <h2>Input</h2> * <h2>Input</h2>
* <p> * <p>