diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/filters/VECHomopolymer.java b/java/src/org/broadinstitute/sting/gatk/walkers/filters/VECHomopolymer.java index f33fe54c5..91b960f53 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/filters/VECHomopolymer.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/filters/VECHomopolymer.java @@ -1,5 +1,6 @@ package org.broadinstitute.sting.gatk.walkers.filters; +import net.sf.picard.reference.ReferenceSequence; import org.broadinstitute.sting.gatk.contexts.AlignmentContext; import org.broadinstitute.sting.gatk.contexts.VariantContext; import org.broadinstitute.sting.utils.BaseUtils; @@ -9,8 +10,6 @@ import java.io.File; import java.io.IOException; import java.util.HashMap; -import net.sf.picard.reference.ReferenceSequence; - /** * Created by IntelliJ IDEA. @@ -33,7 +32,7 @@ public class VECHomopolymer implements VariantExclusionCriterion { if ( args.get("extent") != null ) extent = Integer.valueOf(args.get("extent")); if ( args.get("fraction") != null ) - frac = Integer.valueOf(args.get("fraction")); + frac = Float.valueOf(args.get("fraction")); File refFile = new File ("/seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta");