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the underlying parameter is a float so we need to use Float.valueOf() instead; Noticed by external user Hou Huabin 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1958 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2009-11-02 20:22:25 +00:00
parent 5a510e6d98
commit b71b66bd88
1 changed files with 2 additions and 3 deletions
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5
java/src/org/broadinstitute/sting/gatk/walkers/filters/VECHomopolymer.java
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@ -1,5 +1,6 @@
package org.broadinstitute.sting.gatk.walkers.filters;
import net.sf.picard.reference.ReferenceSequence;
import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
import org.broadinstitute.sting.gatk.contexts.VariantContext;
import org.broadinstitute.sting.utils.BaseUtils;
@ -9,8 +10,6 @@ import java.io.File;
import java.io.IOException;
import java.util.HashMap;
import net.sf.picard.reference.ReferenceSequence;
/**
* Created by IntelliJ IDEA.
@ -33,7 +32,7 @@ public class VECHomopolymer implements VariantExclusionCriterion {
if ( args.get("extent") != null )
extent = Integer.valueOf(args.get("extent"));
if ( args.get("fraction") != null )
frac = Integer.valueOf(args.get("fraction"));
frac = Float.valueOf(args.get("fraction"));
File refFile = new File ("/seq/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta");