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Updated GenomicAnnotator integration tests to include the -NO_HEADER argument so that they tests op yelling about trtrivial differences 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5398 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kiran 2011-03-07 23:07:01 +00:00
parent 85ff983a59
commit b6339967f8
1 changed files with 3 additions and 1 deletions
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4
java/test/org/broadinstitute/sting/gatk/walkers/annotator/genomicannotator/GenomicAnnotatorIntegrationTest.java
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@ -54,10 +54,11 @@ public class GenomicAnnotatorIntegrationTest extends WalkerTest {
"-L 22:10000000-20000000", "-L 22:10000000-20000000",
"-B:refseq,AnnotatorInputTable " + b37Refseq, "-B:refseq,AnnotatorInputTable " + b37Refseq,
"-B:variant,VCF " + testFileWithIndels, "-B:variant,VCF " + testFileWithIndels,
"-NO_HEADER",
"-o %s" "-o %s"
), ),
1, 1,
Arrays.asList("1f8189433e87cc0b986cddb6a9a74585") Arrays.asList("cdf1037b5d17635398268f473160730c")
); );
executeTest("testGenomicAnnotatorOnIndels", testOnIndels); executeTest("testGenomicAnnotatorOnIndels", testOnIndels);
} }
@ -71,6 +72,7 @@ public class GenomicAnnotatorIntegrationTest extends WalkerTest {
"-L 22:10000000-20000000", "-L 22:10000000-20000000",
"-B:refseq,AnnotatorInputTable " + b37Refseq, "-B:refseq,AnnotatorInputTable " + b37Refseq,
"-B:variant,VCF " + testFileWithSNPsAndIndels, "-B:variant,VCF " + testFileWithSNPsAndIndels,
"-NO_HEADER",
"-o %s" "-o %s"
), ),
1, 1,