zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

The header was never being set. 

Added this hack for now and will alert the authorities ASAP... 


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@708 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-05-14 17:18:51 +00:00
parent 959cf09d4b
commit b62bddee42
1 changed files with 2 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java
View File

@ -179,6 +179,8 @@ public abstract class TraversalEngine {
* @return the header if it's stored, null if not * @return the header if it's stored, null if not
*/ */
public SAMFileHeader getSAMHeader() { public SAMFileHeader getSAMHeader() {
if ( myHeader == null )
myHeader = samReader.getFileHeader();
return myHeader; return myHeader;
} }