diff --git a/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java b/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java index 4971b2efd..e87f99fd2 100755 --- a/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java +++ b/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java @@ -179,6 +179,8 @@ public abstract class TraversalEngine { * @return the header if it's stored, null if not */ public SAMFileHeader getSAMHeader() { + if ( myHeader == null ) + myHeader = samReader.getFileHeader(); return myHeader; }