diff --git a/java/test/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataPoolTest.java b/java/test/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataPoolTest.java
index 8ab81c41d..75bc785f6 100755
--- a/java/test/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataPoolTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataPoolTest.java
@@ -32,8 +32,6 @@ import java.io.FileNotFoundException;
 
 public class ReferenceOrderedDataPoolTest extends BaseTest {
 
-    private static File sequenceFile = new File(seqLocation + "/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta");
-
     private ReferenceOrderedData<? extends ReferenceOrderedDatum> rod = null;
 
     private final GenomeLoc testSite1 = GenomeLocParser.createGenomeLoc("chrM",10);
@@ -42,6 +40,7 @@ public class ReferenceOrderedDataPoolTest extends BaseTest {
 
     @BeforeClass
     public static void init() throws FileNotFoundException {
+        File sequenceFile = new File(seqLocation + "/references/Homo_sapiens_assembly18/v0/Homo_sapiens_assembly18.fasta");
         GenomeLocParser.setupRefContigOrdering(new IndexedFastaSequenceFile(sequenceFile));
         TabularROD.setDelimiter(TabularROD.DEFAULT_DELIMITER, TabularROD.DEFAULT_DELIMITER_REGEX);
     }
diff --git a/settings/repository/edu.mit.broad/picard-private-parts-1194.jar b/settings/repository/edu.mit.broad/picard-private-parts-1198.jar
similarity index 82%
rename from settings/repository/edu.mit.broad/picard-private-parts-1194.jar
rename to settings/repository/edu.mit.broad/picard-private-parts-1198.jar
index 4d44f021b..b46954c67 100644
Binary files a/settings/repository/edu.mit.broad/picard-private-parts-1194.jar and b/settings/repository/edu.mit.broad/picard-private-parts-1198.jar differ
diff --git a/settings/repository/edu.mit.broad/picard-private-parts-1194.xml b/settings/repository/edu.mit.broad/picard-private-parts-1198.xml
similarity index 58%
rename from settings/repository/edu.mit.broad/picard-private-parts-1194.xml
rename to settings/repository/edu.mit.broad/picard-private-parts-1198.xml
index 30727172f..dfd1759d8 100644
--- a/settings/repository/edu.mit.broad/picard-private-parts-1194.xml
+++ b/settings/repository/edu.mit.broad/picard-private-parts-1198.xml
@@ -1,3 +1,3 @@
 <ivy-module version="1.0">
-    <info organisation="edu.mit.broad" module="picard-private-parts" revision="1194" status="integration" publication="20091223171200" />
+    <info organisation="edu.mit.broad" module="picard-private-parts" revision="1198" status="integration" publication="20091228124200" />
 </ivy-module>
diff --git a/settings/repository/net.sf/picard-1.11.221.jar b/settings/repository/net.sf/picard-1.11.225.jar
similarity index 95%
rename from settings/repository/net.sf/picard-1.11.221.jar
rename to settings/repository/net.sf/picard-1.11.225.jar
index ea0f84700..d56e5ddb6 100644
Binary files a/settings/repository/net.sf/picard-1.11.221.jar and b/settings/repository/net.sf/picard-1.11.225.jar differ
diff --git a/settings/repository/net.sf/picard-1.11.221.xml b/settings/repository/net.sf/picard-1.11.225.xml
similarity index 81%
rename from settings/repository/net.sf/picard-1.11.221.xml
rename to settings/repository/net.sf/picard-1.11.225.xml
index d7bd65cb8..a993ee9c6 100644
--- a/settings/repository/net.sf/picard-1.11.221.xml
+++ b/settings/repository/net.sf/picard-1.11.225.xml
@@ -1,3 +1,3 @@
 <ivy-module version="1.0">
-    <info organisation="net.sf" module="picard" revision="1.11.221" status="release" />
+    <info organisation="net.sf" module="picard" revision="1.11.225" status="release" />
 </ivy-module>
diff --git a/settings/repository/net.sf/sam-1.11.221.xml b/settings/repository/net.sf/sam-1.11.221.xml
deleted file mode 100644
index 4bde634cd..000000000
--- a/settings/repository/net.sf/sam-1.11.221.xml
+++ /dev/null
@@ -1,3 +0,0 @@
-<ivy-module version="1.0">
-    <info organisation="net.sf" module="sam" revision="1.11.221" status="release" />
-</ivy-module>
diff --git a/settings/repository/net.sf/sam-1.11.221.jar b/settings/repository/net.sf/sam-1.11.225.jar
similarity index 88%
rename from settings/repository/net.sf/sam-1.11.221.jar
rename to settings/repository/net.sf/sam-1.11.225.jar
index cc99b5d09..7516ead34 100644
Binary files a/settings/repository/net.sf/sam-1.11.221.jar and b/settings/repository/net.sf/sam-1.11.225.jar differ
diff --git a/settings/repository/net.sf/sam-1.11.225.xml b/settings/repository/net.sf/sam-1.11.225.xml
new file mode 100644
index 000000000..c603dfc29
--- /dev/null
+++ b/settings/repository/net.sf/sam-1.11.225.xml
@@ -0,0 +1,3 @@
+<ivy-module version="1.0">
+    <info organisation="net.sf" module="sam" revision="1.11.225" status="release" />
+</ivy-module>