From 563801713742076f71f4a08df1b1de5dfe256e27 Mon Sep 17 00:00:00 2001
From: Kiran V Garimella <kiran@broadinstitute.org>
Date: Sat, 23 Jul 2011 00:56:23 -0400
Subject: [PATCH] Removed the nofilters argument specification in the
 integrationtest

---
 .../gatk/walkers/phasing/PhaseByTransmissionIntegrationTest.java | 1 -
 1 file changed, 1 deletion(-)

diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmissionIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmissionIntegrationTest.java
index f3c883e1a..6e8c139dd 100644
--- a/public/java/test/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmissionIntegrationTest.java
+++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmissionIntegrationTest.java
@@ -17,7 +17,6 @@ public class PhaseByTransmissionIntegrationTest extends WalkerTest {
                         "-R " + b37KGReference,
                         "-B:variant,VCF " + fundamentalTestVCF,
                         "-f NA12892+NA12891=NA12878",
-                        "-nofilters",
                         "-o %s"
                 ),
                 1,