diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmissionIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmissionIntegrationTest.java index f3c883e1a..6e8c139dd 100644 --- a/public/java/test/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmissionIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmissionIntegrationTest.java @@ -17,7 +17,6 @@ public class PhaseByTransmissionIntegrationTest extends WalkerTest { "-R " + b37KGReference, "-B:variant,VCF " + fundamentalTestVCF, "-f NA12892+NA12891=NA12878", - "-nofilters", "-o %s" ), 1,