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Merge pull request #88 from broadinstitute/eb_fix_pairHMM_from_stable 

Revert push from stable
This commit is contained in:
Eric Banks 2013-03-05 06:07:50 -08:00
parent a037423225 bbbaf9ad20
commit b5a07da04c
1 changed files with 1 additions and 1 deletions
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protected/java/src/org/broadinstitute/sting/gatk/walkers/indels/PairHMMIndelErrorModel.java
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@ -397,7 +397,7 @@ public class PairHMMIndelErrorModel {
if (previousHaplotypeSeen == null) { if (previousHaplotypeSeen == null) {
//no need to reallocate arrays for each new haplotype, as length won't change //no need to reallocate arrays for each new haplotype, as length won't change
pairHMM.initialize(X_METRIC_LENGTH, Y_METRIC_LENGTH); pairHMM.initialize(Y_METRIC_LENGTH, X_METRIC_LENGTH);
} }
int startIndexInHaplotype = 0; int startIndexInHaplotype = 0;