diff --git a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala index 1c2620441..30b5cb084 100644 --- a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala +++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala @@ -31,7 +31,7 @@ class VcfToPed extends QScript { var intervals : File = _ @Argument(shortName="R",fullName="Ref",required=false,doc="Reference file") - var ref : File = new File("/humgen/1kg/references/human_g1k_v37.fasta") + var ref : File = new File("/humgen/1kg/reference/human_g1k_v37.fasta") @Argument(shortName="D",fullName="dbsnp",required=false,doc="dbsnp file") var dbsnp : File = new File("/humgen/gsa-hpprojects/GATK/data/dbsnp_129_b37.vcf")