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Use the right reference path :(

This commit is contained in:
Christopher Hartl 2012-02-01 12:35:18 -05:00
parent 87a63d54d6
commit b567ed8793
1 changed files with 1 additions and 1 deletions
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2
public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/VcfToPed.scala
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@ -31,7 +31,7 @@ class VcfToPed extends QScript {
var intervals : File = _
@Argument(shortName="R",fullName="Ref",required=false,doc="Reference file")
var ref : File = new File("/humgen/1kg/references/human_g1k_v37.fasta")
var ref : File = new File("/humgen/1kg/reference/human_g1k_v37.fasta")
@Argument(shortName="D",fullName="dbsnp",required=false,doc="dbsnp file")
var dbsnp : File = new File("/humgen/gsa-hpprojects/GATK/data/dbsnp_129_b37.vcf")