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Actually commit the code that makes variant eval run in a reasonable amount of time. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3872 348d0f76-0448-11de-a6fe-93d51630548a
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depristo 2010-07-24 17:32:03 +00:00
parent b0b37c3476
commit b551eaf8fd
1 changed files with 2 additions and 2 deletions
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4
java/src/org/broadinstitute/sting/oneoffprojects/walkers/varianteval/AminoAcidTransition.java
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@ -173,8 +173,8 @@ public class AminoAcidTransition extends VariantEvaluator {
public String update1(VariantContext eval, RefMetaDataTracker tracker, ReferenceContext ref, AlignmentContext context) { public String update1(VariantContext eval, RefMetaDataTracker tracker, ReferenceContext ref, AlignmentContext context) {
String interesting = null; String interesting = null;
if ( eval != null && eval.hasAttribute(infoKey) ) { //if ( eval != null && eval.hasAttribute(infoKey) ) {
//if ( enabled && eval != null && eval.hasAttribute(infoKey) ) { if ( enabled && eval != null && eval.hasAttribute(infoKey) ) {
String[] parsedNames = ( (String) eval.getAttribute(infoKey)).split(infoValueSplit); String[] parsedNames = ( (String) eval.getAttribute(infoKey)).split(infoValueSplit);
String first = "none"; String first = "none";
String second = "none"; String second = "none";