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renaming MergingIterator to RODMergingIterator as it is more appropriate for this specialized implementation 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4462 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
asivache 2010-10-08 14:10:11 +00:00
parent 77dddd0afa
commit b3d81984aa
1 changed files with 3 additions and 3 deletions
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6
java/src/org/broadinstitute/sting/gatk/datasources/providers/RodLocusView.java
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@ -31,7 +31,7 @@ import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
import org.broadinstitute.sting.gatk.refdata.utils.LocationAwareSeekableRODIterator; import org.broadinstitute.sting.gatk.refdata.utils.LocationAwareSeekableRODIterator;
import org.broadinstitute.sting.gatk.refdata.utils.RODRecordList; import org.broadinstitute.sting.gatk.refdata.utils.RODRecordList;
import org.broadinstitute.sting.utils.GenomeLoc; import org.broadinstitute.sting.utils.GenomeLoc;
import org.broadinstitute.sting.utils.collections.MergingIterator; import org.broadinstitute.sting.utils.collections.RODMergingIterator;
import org.broadinstitute.sting.utils.GenomeLocParser; import org.broadinstitute.sting.utils.GenomeLocParser;
import org.broadinstitute.sting.utils.pileup.ReadBackedPileupImpl; import org.broadinstitute.sting.utils.pileup.ReadBackedPileupImpl;
@ -44,7 +44,7 @@ public class RodLocusView extends LocusView implements ReferenceOrderedView {
/** /**
* The data sources along with their current states. * The data sources along with their current states.
*/ */
private MergingIterator rodQueue = null; private RODMergingIterator rodQueue = null;
RefMetaDataTracker tracker = null; RefMetaDataTracker tracker = null;
GenomeLoc lastLoc = null; GenomeLoc lastLoc = null;
@ -94,7 +94,7 @@ public class RodLocusView extends LocusView implements ReferenceOrderedView {
} }
} }
rodQueue = new MergingIterator(iterators); rodQueue = new RODMergingIterator(iterators);
//throw new StingException("RodLocusView currently disabled"); //throw new StingException("RodLocusView currently disabled");
} }