zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Since GCcontentIntervalWalker no longer uses any ROD, turn it into a LocusWalker that traverses by REFERENCE 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5635 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
fromer 2011-04-14 03:15:09 +00:00
parent 475ad1259d
commit b3cd14d10a
1 changed files with 3 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
java/src/org/broadinstitute/sting/oneoffprojects/walkers/CNV/GCcontentIntervalWalker.java
View File

@ -45,7 +45,9 @@ import java.util.*;
@Allows(value = {DataSource.REFERENCE}) @Allows(value = {DataSource.REFERENCE})
@Requires(value = {DataSource.REFERENCE}) @Requires(value = {DataSource.REFERENCE})
public class GCcontentIntervalWalker extends RodWalker<GCcounter, GCcounter> { @By(DataSource.REFERENCE)
public class GCcontentIntervalWalker extends LocusWalker<GCcounter, GCcounter> {
@Output @Output
protected PrintStream out; protected PrintStream out;