From b3cd14d10a2c0e1259c45906e6bdf1dab8521778 Mon Sep 17 00:00:00 2001
From: fromer <fromer@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 14 Apr 2011 03:15:09 +0000
Subject: [PATCH] Since GCcontentIntervalWalker no longer uses any ROD, turn it
 into a LocusWalker that traverses by REFERENCE

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5635 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../oneoffprojects/walkers/CNV/GCcontentIntervalWalker.java   | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/CNV/GCcontentIntervalWalker.java b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/CNV/GCcontentIntervalWalker.java
index 8cddd0b64..0922df26d 100755
--- a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/CNV/GCcontentIntervalWalker.java
+++ b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/CNV/GCcontentIntervalWalker.java
@@ -45,7 +45,9 @@ import java.util.*;
 @Allows(value = {DataSource.REFERENCE})
 @Requires(value = {DataSource.REFERENCE})
 
-public class GCcontentIntervalWalker extends RodWalker<GCcounter, GCcounter> {
+@By(DataSource.REFERENCE)
+
+public class GCcontentIntervalWalker extends LocusWalker<GCcounter, GCcounter> {
     @Output
     protected PrintStream out;