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Since GCcontentIntervalWalker no longer uses any ROD, turn it into a LocusWalker that traverses by REFERENCE 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5635 348d0f76-0448-11de-a6fe-93d51630548a
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fromer 2011-04-14 03:15:09 +00:00
parent 475ad1259d
commit b3cd14d10a
1 changed files with 3 additions and 1 deletions
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4
java/src/org/broadinstitute/sting/oneoffprojects/walkers/CNV/GCcontentIntervalWalker.java
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@ -45,7 +45,9 @@ import java.util.*;
@Allows(value = {DataSource.REFERENCE})
@Requires(value = {DataSource.REFERENCE})
public class GCcontentIntervalWalker extends RodWalker<GCcounter, GCcounter> {
@By(DataSource.REFERENCE)
public class GCcontentIntervalWalker extends LocusWalker<GCcounter, GCcounter> {
@Output
protected PrintStream out;