diff --git a/public/gatk-root/pom.xml b/public/gatk-root/pom.xml
index 7dbb397af..13d4b4f57 100644
--- a/public/gatk-root/pom.xml
+++ b/public/gatk-root/pom.xml
@@ -44,8 +44,8 @@
         <test.listeners>org.testng.reporters.FailedReporter,org.testng.reporters.JUnitXMLReporter,org.broadinstitute.gatk.utils.TestNGTestTransformer,org.broadinstitute.gatk.utils.GATKTextReporter,org.uncommons.reportng.HTMLReporter</test.listeners>
 
         <!-- Version numbers for picard and htsjdk -->
-        <htsjdk.version>1.120.1620</htsjdk.version>
-        <picard.version>1.120.1579</picard.version>
+        <htsjdk.version>1.123.1654</htsjdk.version>
+        <picard.version>1.123.1612</picard.version>
     </properties>
 
     <!-- Dependency configuration (versions, etc.) -->
diff --git a/public/repo/picard/picard/1.120.1579/picard-1.120.1579.jar b/public/repo/picard/picard/1.123.1612/picard-1.123.1612.jar
similarity index 54%
rename from public/repo/picard/picard/1.120.1579/picard-1.120.1579.jar
rename to public/repo/picard/picard/1.123.1612/picard-1.123.1612.jar
index fa3fa36c0..bdeefa945 100644
Binary files a/public/repo/picard/picard/1.120.1579/picard-1.120.1579.jar and b/public/repo/picard/picard/1.123.1612/picard-1.123.1612.jar differ
diff --git a/public/repo/picard/picard/1.120.1579/picard-1.120.1579.pom b/public/repo/picard/picard/1.123.1612/picard-1.123.1612.pom
similarity index 94%
rename from public/repo/picard/picard/1.120.1579/picard-1.120.1579.pom
rename to public/repo/picard/picard/1.123.1612/picard-1.123.1612.pom
index cca997246..a2ba883e1 100644
--- a/public/repo/picard/picard/1.120.1579/picard-1.120.1579.pom
+++ b/public/repo/picard/picard/1.123.1612/picard-1.123.1612.pom
@@ -3,13 +3,13 @@
     <modelVersion>4.0.0</modelVersion>
     <groupId>picard</groupId>
     <artifactId>picard</artifactId>
-    <version>1.120.1579</version>
+    <version>1.123.1612</version>
     <name>picard</name>
     <dependencies>
         <dependency>
             <groupId>samtools</groupId>
             <artifactId>htsjdk</artifactId>
-            <version>1.120.1620</version>
+            <version>1.123.1654</version>
         </dependency>
         <!-- TODO: Picard is using a custom zip with just ant's BZip2 classes. See also: http://www.kohsuke.org/bzip2 -->
         <dependency>
diff --git a/public/repo/samtools/htsjdk/1.120.1620/htsjdk-1.120.1620.jar b/public/repo/samtools/htsjdk/1.123.1654/htsjdk-1.123.1654.jar
similarity index 92%
rename from public/repo/samtools/htsjdk/1.120.1620/htsjdk-1.120.1620.jar
rename to public/repo/samtools/htsjdk/1.123.1654/htsjdk-1.123.1654.jar
index 8480ddc05..46538ff07 100644
Binary files a/public/repo/samtools/htsjdk/1.120.1620/htsjdk-1.120.1620.jar and b/public/repo/samtools/htsjdk/1.123.1654/htsjdk-1.123.1654.jar differ
diff --git a/public/repo/samtools/htsjdk/1.120.1620/htsjdk-1.120.1620.pom b/public/repo/samtools/htsjdk/1.123.1654/htsjdk-1.123.1654.pom
similarity index 96%
rename from public/repo/samtools/htsjdk/1.120.1620/htsjdk-1.120.1620.pom
rename to public/repo/samtools/htsjdk/1.123.1654/htsjdk-1.123.1654.pom
index 04ebef8a3..e57a2fcc6 100644
--- a/public/repo/samtools/htsjdk/1.120.1620/htsjdk-1.120.1620.pom
+++ b/public/repo/samtools/htsjdk/1.123.1654/htsjdk-1.123.1654.pom
@@ -3,7 +3,7 @@
     <modelVersion>4.0.0</modelVersion>
     <groupId>samtools</groupId>
     <artifactId>htsjdk</artifactId>
-    <version>1.120.1620</version>
+    <version>1.123.1654</version>
     <name>htsjdk</name>
     <dependencies>
         <dependency>