Picard made major changes post-v1.123. Update our tools to handle them

This commit is contained in:
Phillip Dexheimer 2014-10-23 21:42:05 -04:00
parent b69b256003
commit b3b569f43a
5 changed files with 5 additions and 5 deletions

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@ -44,8 +44,8 @@
<test.listeners>org.testng.reporters.FailedReporter,org.testng.reporters.JUnitXMLReporter,org.broadinstitute.gatk.utils.TestNGTestTransformer,org.broadinstitute.gatk.utils.GATKTextReporter,org.uncommons.reportng.HTMLReporter</test.listeners>
<!-- Version numbers for picard and htsjdk -->
<htsjdk.version>1.120.1620</htsjdk.version>
<picard.version>1.120.1579</picard.version>
<htsjdk.version>1.123.1654</htsjdk.version>
<picard.version>1.123.1612</picard.version>
</properties>
<!-- Dependency configuration (versions, etc.) -->

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@ -3,13 +3,13 @@
<modelVersion>4.0.0</modelVersion>
<groupId>picard</groupId>
<artifactId>picard</artifactId>
<version>1.120.1579</version>
<version>1.123.1612</version>
<name>picard</name>
<dependencies>
<dependency>
<groupId>samtools</groupId>
<artifactId>htsjdk</artifactId>
<version>1.120.1620</version>
<version>1.123.1654</version>
</dependency>
<!-- TODO: Picard is using a custom zip with just ant's BZip2 classes. See also: http://www.kohsuke.org/bzip2 -->
<dependency>

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@ -3,7 +3,7 @@
<modelVersion>4.0.0</modelVersion>
<groupId>samtools</groupId>
<artifactId>htsjdk</artifactId>
<version>1.120.1620</version>
<version>1.123.1654</version>
<name>htsjdk</name>
<dependencies>
<dependency>