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Merge branch 'master' into ped

This commit is contained in:
Mark DePristo 2011-09-29 14:32:17 -04:00
parent 68761a6e28 a5e75cd14c
commit b3a2371925
1 changed files with 1 additions and 0 deletions
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public/java/src/org/broadinstitute/sting/utils/sam/ReadUtils.java
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@ -52,6 +52,7 @@ public class ReadUtils {
// ---------------------------------------------------------------------------------------------------- // ----------------------------------------------------------------------------------------------------
public static final String REDUCED_READ_QUALITY_TAG = "RQ"; public static final String REDUCED_READ_QUALITY_TAG = "RQ";
public static final String REDUCED_READ_CONSENSUS_COUNTS_TAG = "CC";
public final static Integer getReducedReadQualityTagValue(final SAMRecord read) { public final static Integer getReducedReadQualityTagValue(final SAMRecord read) {
return read.getIntegerAttribute(ReadUtils.REDUCED_READ_QUALITY_TAG); return read.getIntegerAttribute(ReadUtils.REDUCED_READ_QUALITY_TAG);