diff --git a/public/java/src/org/broadinstitute/sting/utils/recalibration/RecalDatum.java b/public/java/src/org/broadinstitute/sting/utils/recalibration/RecalDatum.java index 31eb40d24..4cacc26c4 100755 --- a/public/java/src/org/broadinstitute/sting/utils/recalibration/RecalDatum.java +++ b/public/java/src/org/broadinstitute/sting/utils/recalibration/RecalDatum.java @@ -248,8 +248,9 @@ public class RecalDatum { @Requires({"incObservations >= 0", "incMismatches >= 0"}) @Ensures({"numObservations == old(numObservations) + incObservations", "numMismatches == old(numMismatches) + incMismatches"}) public synchronized void increment(final double incObservations, final double incMismatches) { - incrementNumObservations(incObservations); - incrementNumMismatches(incMismatches); + numObservations += incObservations; + numMismatches += incMismatches; + empiricalQuality = UNINITIALIZED; } @Ensures({"numObservations == old(numObservations) + 1", "numMismatches >= old(numMismatches)"})