don't output deletions as bases in the read (consensus)

Browse Source

The running consensus accepts deletions as long as they are homozygous and (with the current parameters) there is only one read in the pileup. It was generating the cigar string correctly but adding the "D" base to the read bases. Fixed.

...

This commit is contained in:

Mauricio Carneiro 2011-08-29 16:21:21 -04:00

parent dc140b9f18

commit b2f39fef8e

Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL

Show Stats Download Patch File Download Diff File Expand all files Collapse all files

Diff Content Not Available