From b2dfe85648a1c491a7aab2db71239a8f25a37dad Mon Sep 17 00:00:00 2001 From: depristo Date: Thu, 10 Dec 2009 12:16:05 +0000 Subject: [PATCH] Better support for reading truth file git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2307 348d0f76-0448-11de-a6fe-93d51630548a --- python/snpSelector.py | 6 ------ 1 file changed, 6 deletions(-) diff --git a/python/snpSelector.py b/python/snpSelector.py index a0f555c4a..6571ec32d 100755 --- a/python/snpSelector.py +++ b/python/snpSelector.py @@ -621,12 +621,6 @@ def main(): truthVCF = OPTIONS.truth TRUTH_CALLS = readTruth(truthVCF) - if len(args) > 1: - truthVCF = args[1] - TRUTH_CALLS = readTruth(truthVCF) - #for v in TRUTH_CALLS.itervalues(): print v.getField("NA12878") - #sys.exit(1) - if OPTIONS.recalLog <> None: RECAL_LOG = open(OPTIONS.recalLog, "w") print >> RECAL_LOG, "# optimized vcf", args[0]