zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

unfortunately samrecord pileup also uses zero length intervals to indicate deletions; this will have to be a BED specific exception. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4964 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2011-01-07 22:32:50 +00:00
parent b34e2f733f
commit b24e1134f9
1 changed files with 0 additions and 3 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

3
java/src/org/broadinstitute/sting/gatk/refdata/utils/GATKFeature.java
View File

@ -75,9 +75,6 @@ public abstract class GATKFeature implements Feature {
}
public GenomeLoc getLocation() {
if (position == null) position = genomeLocParser.createGenomeLoc(feature.getChr(), feature.getStart(), feature.getEnd());
if (position.getStart() > position.getStop()) {
throw new UserException.BadInput("A feature produced by the reference metadata track named \"" + this.name + "\" at position " + position + " has a start greater than the stop; this is an invalid this is an invalid position");
}
return position;
}