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This comment is no longer true

This commit is contained in:
Joel Thibault 2014-04-11 15:57:28 -04:00
parent 34ece31f4a
commit b197618d13
1 changed files with 0 additions and 1 deletions
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public/gatk-framework/src/main/java/org/broadinstitute/sting/gatk/io/storage/VariantContextWriterStorage.java
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@ -131,7 +131,6 @@ public class VariantContextWriterStorage implements Storage<VariantContextWriter
throw new UserException.CouldNotCreateOutputFile(file, "Unable to open target output stream", ex); throw new UserException.CouldNotCreateOutputFile(file, "Unable to open target output stream", ex);
} }
// The GATK/Tribble can't currently index block-compressed files on the fly. Disable OTF indexing even if the user explicitly asked for it.
EnumSet<Options> options = stub.getWriterOptions(indexOnTheFly); EnumSet<Options> options = stub.getWriterOptions(indexOnTheFly);
VariantContextWriter writer = VariantContextWriterFactory.create(file, this.stream, stub.getMasterSequenceDictionary(), stub.getIndexCreator(), options); VariantContextWriter writer = VariantContextWriterFactory.create(file, this.stream, stub.getMasterSequenceDictionary(), stub.getIndexCreator(), options);