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Updated md5's from BiasedDownsamplerIntegrationTest that changed due to changes in HaplotypeCaller - changing HashMaps to LinkedHashMaps changed ordering of reads presented to BiasedDownSampler which changed reads chosen, thereby marginally changing PL's and some site info.

This commit is contained in:
Guillermo del Angel 2013-02-14 20:18:49 -05:00
parent 5cc5aedcd1
commit b18f216033
1 changed files with 2 additions and 2 deletions
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4
protected/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/BiasedDownsamplingIntegrationTest.java
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@ -288,12 +288,12 @@ public class BiasedDownsamplingIntegrationTest extends WalkerTest {
@Test
public void testHCFlatContaminationCase2() {
testHCFlatContamination("NA11918.with.1.NA12842.reduced.bam", "NA12842.with.1.NA11918.reduced.bam", 0.1, "68ea1c00e9e3f831e519a206ae7fa6b1");
testHCFlatContamination("NA11918.with.1.NA12842.reduced.bam", "NA12842.with.1.NA11918.reduced.bam", 0.1, "5b0c3dfd6885dd0b0dfc4d979e1bef67");
}
@Test
public void testHCFlatContaminationCase3() {
testHCFlatContamination("NA11918.with.1.NA12842.reduced.bam", "NA12842.with.1.NA11918.reduced.bam", 0.2, "1e93cdc054216f0d81b0d1ae92320cfc");
testHCFlatContamination("NA11918.with.1.NA12842.reduced.bam", "NA12842.with.1.NA11918.reduced.bam", 0.2, "68c23ceccd4d10fccd1b59432b374c5c");
}
}