From b107c97c1a8eb936fe4eee07f4413a0917004c24 Mon Sep 17 00:00:00 2001 From: fromer Date: Thu, 13 Jan 2011 17:23:44 +0000 Subject: [PATCH] Cannot have "=" sign in reason, so change to ":" git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4991 348d0f76-0448-11de-a6fe-93d51630548a --- .../gatk/walkers/varianteval/GenotypePhasingEvaluator.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/GenotypePhasingEvaluator.java b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/GenotypePhasingEvaluator.java index 24e10bb81..5587a0180 100644 --- a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/GenotypePhasingEvaluator.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/GenotypePhasingEvaluator.java @@ -245,7 +245,7 @@ public class GenotypePhasingEvaluator extends VariantEvaluator { } public void addReason(String category, String sample, VariantEvalWalker.EvaluationContext evalGroup, GenomeLoc prevLoc, String reason) { - sb.append(category + "(" + sample + ", previous= " + prevLoc + " [" + evalGroup.compTrackName + ", " + evalGroup.evalTrackName + "]): " + reason + ";"); + sb.append(category + "(" + sample + ", previous: " + prevLoc + " [" + evalGroup.compTrackName + ", " + evalGroup.evalTrackName + "]): " + reason + ";"); } public String toString() {