diff --git a/public/scala/qscript/examples/ExampleCountLoci.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCountLoci.scala
similarity index 93%
rename from public/scala/qscript/examples/ExampleCountLoci.scala
rename to public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCountLoci.scala
index ba834e72f..4ca3cbb89 100644
--- a/public/scala/qscript/examples/ExampleCountLoci.scala
+++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCountLoci.scala
@@ -1,3 +1,5 @@
+package org.broadinstitute.sting.queue.qscripts.examples
+
 import org.broadinstitute.sting.queue.QScript
 import org.broadinstitute.sting.queue.extensions.gatk._
 
diff --git a/public/scala/qscript/examples/ExampleCountReads.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCountReads.scala
similarity index 97%
rename from public/scala/qscript/examples/ExampleCountReads.scala
rename to public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCountReads.scala
index 85f796a51..9fdd1ba4c 100644
--- a/public/scala/qscript/examples/ExampleCountReads.scala
+++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCountReads.scala
@@ -1,3 +1,5 @@
+package org.broadinstitute.sting.queue.qscripts.examples
+
 import org.broadinstitute.sting.queue.QScript
 import org.broadinstitute.sting.queue.extensions.gatk._
 
diff --git a/public/scala/qscript/examples/ExampleCustomWalker.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCustomWalker.scala
similarity index 96%
rename from public/scala/qscript/examples/ExampleCustomWalker.scala
rename to public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCustomWalker.scala
index 340934b5b..d3796d350 100644
--- a/public/scala/qscript/examples/ExampleCustomWalker.scala
+++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleCustomWalker.scala
@@ -1,3 +1,5 @@
+package org.broadinstitute.sting.queue.qscripts.examples
+
 import org.broadinstitute.sting.queue.QScript
 import org.broadinstitute.sting.queue.extensions.gatk._
 
diff --git a/public/scala/qscript/examples/ExampleUnifiedGenotyper.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleUnifiedGenotyper.scala
similarity index 98%
rename from public/scala/qscript/examples/ExampleUnifiedGenotyper.scala
rename to public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleUnifiedGenotyper.scala
index 2f6940d64..4a93233eb 100644
--- a/public/scala/qscript/examples/ExampleUnifiedGenotyper.scala
+++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/ExampleUnifiedGenotyper.scala
@@ -1,3 +1,5 @@
+package org.broadinstitute.sting.queue.qscripts.examples
+
 import org.broadinstitute.sting.queue.QScript
 import org.broadinstitute.sting.queue.extensions.gatk._
 
diff --git a/public/scala/qscript/examples/HelloWorld.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/HelloWorld.scala
similarity index 76%
rename from public/scala/qscript/examples/HelloWorld.scala
rename to public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/HelloWorld.scala
index 64e0c161c..9f2ce27fe 100644
--- a/public/scala/qscript/examples/HelloWorld.scala
+++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/examples/HelloWorld.scala
@@ -1,3 +1,5 @@
+package org.broadinstitute.sting.queue.qscripts.examples
+
 import org.broadinstitute.sting.queue.QScript
 
 class HelloWorld extends QScript {
diff --git a/public/scala/qscript/lib/Vcf2Table.q b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/Vcf2Table.q
similarity index 95%
rename from public/scala/qscript/lib/Vcf2Table.q
rename to public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/Vcf2Table.q
index 1b66a648b..25ff8fddd 100755
--- a/public/scala/qscript/lib/Vcf2Table.q
+++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/lib/Vcf2Table.q
@@ -1,3 +1,5 @@
+package org.broadinstitute.sting.queue.qscripts.lib
+
 import org.broadinstitute.sting.commandline.Hidden
 import org.broadinstitute.sting.queue.extensions.gatk.{RodBind, VariantsToTable}
 import org.broadinstitute.sting.queue.QScript