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Fixed recal integration test 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1689 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-09-22 20:22:32 +00:00
parent 0748d80baa
commit b0fa19a0b2
1 changed files with 5 additions and 5 deletions
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10
java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java
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@ -15,9 +15,9 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest {
@Test
public void testCountCovariates1() {
HashMap<String, String> e = new HashMap<String, String>();
e.put( "/humgen/gsa-scr1/GATK_Data/Validation_Data/NA12878.SLX.SRP000031.2009_06.chr1.10_20mb.bam", "47664c48992f593258932583576b47e4" );
e.put( "/humgen/gsa-scr1/GATK_Data/Validation_Data/NA12878.SLX.SRP000031.2009_06.chr1.10_20mb.bam", "7be0b7a624d22187e712131f12aae546" );
//e.put( "/humgen/gsa-scr1/GATK_Data/Validation_Data/NA12762.SOLID.SRP000031.2009_07.chr1.10_20mb.bam", "" );
e.put( "/humgen/gsa-scr1/GATK_Data/Validation_Data/NA12873.454.SRP000031.2009_06.chr1.10_20mb.bam", "b58185dc5fbdd88ca9539d940dff6c1a" );
e.put( "/humgen/gsa-scr1/GATK_Data/Validation_Data/NA12873.454.SRP000031.2009_06.chr1.10_20mb.bam", "dc1a1b6e99f4a47525cc1dce7b6eb1dc" );
for ( Map.Entry<String, String> entry : e.entrySet() ) {
String bam = entry.getKey();
@ -40,9 +40,9 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest {
@Test
public void testTableRecalibrator1() {
HashMap<String, String> e = new HashMap<String, String>();
e.put( "/humgen/gsa-scr1/GATK_Data/Validation_Data/NA12878.SLX.SRP000031.2009_06.chr1.10_20mb.bam", "c98525aca6493179f084159df0264782" );
e.put( "/humgen/gsa-scr1/GATK_Data/Validation_Data/NA12878.SLX.SRP000031.2009_06.chr1.10_20mb.bam", "8d2194cf8134800def32d5268033de70" );
//e.put( "/humgen/gsa-scr1/GATK_Data/Validation_Data/NA12762.SOLID.SRP000031.2009_07.chr1.10_20mb.bam", "" );
//e.put( "/humgen/gsa-scr1/GATK_Data/Validation_Data/NA12873.454.SRP000031.2009_06.chr1.10_20mb.bam", "28c5026359a952a5c652b1ccc2acac04" );
//e.put( "/humgen/gsa-scr1/GATK_Data/Validation_Data/NA12873.454.SRP000031.2009_06.chr1.10_20mb.bam", "" );
for ( Map.Entry<String, String> entry : e.entrySet() ) {
String bam = entry.getKey();
@ -64,4 +64,4 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest {
}
}
}
}
}