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Stabilized NGSPlatform code: don't assume all reads have read groups (e.g. artificial SAM records)

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Eric Banks 2012-06-06 15:17:30 -04:00
parent 54f682a99c
commit b093ba9dcc
1 changed files with 1 additions and 0 deletions
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public/java/src/org/broadinstitute/sting/utils/NGSPlatform.java
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@ -81,6 +81,7 @@ public enum NGSPlatform {
* @return an NGSPlatform object matching the PL field of the header, of UNKNOWN if there was no match * @return an NGSPlatform object matching the PL field of the header, of UNKNOWN if there was no match
*/ */
public static final NGSPlatform fromReadGroup(SAMReadGroupRecord rg) { public static final NGSPlatform fromReadGroup(SAMReadGroupRecord rg) {
if ( rg == null ) return UNKNOWN;
return fromReadGroupPL(rg.getPlatform()); return fromReadGroupPL(rg.getPlatform());
} }