From afd4655674273a6b577f65ea2a29f7851f6893eb Mon Sep 17 00:00:00 2001 From: ebanks Date: Tue, 14 Dec 2010 17:13:15 +0000 Subject: [PATCH] Use @Output instead of @Argument. As a side note, Chris I'm ready for this nightmare to go away... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4835 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/gatk/walkers/genotyper/BatchedCallsMerger.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/BatchedCallsMerger.java b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/BatchedCallsMerger.java index 0a62cf3e3..d7f4f6ca8 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/BatchedCallsMerger.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/BatchedCallsMerger.java @@ -54,7 +54,7 @@ import net.sf.samtools.SAMReadGroupRecord; public class BatchedCallsMerger extends LocusWalker implements TreeReducible { @ArgumentCollection private UnifiedArgumentCollection UAC = new UnifiedArgumentCollection(); - @Argument(doc = "VCF file to which variants should be written", required = true) + @Output(doc = "VCF file to which variants should be written", required = true) public VCFWriter writer = null; @Argument(fullName="rod_list", shortName="rods", doc="A comma-separated string describing the rod names representing individual call batches", required=true)